Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs7903154 chr10:2019437 A/G 0 258 0.73 20.17 33.2 KM Plot
SARC rs79206326 chr16:1493037 G/T 0 247 30.73 32.4 0.73 KM Plot
SARC rs7928715 chr11:71226390 A/G 1.14E-5 257 8.37 25.7 33.48 KM Plot
SARC rs7938984 chr11:71225941 C/G 8.78E-6 254 8.37 25.7 33.77 KM Plot
SARC rs7944276 chr11:64656757 G/A 7.71E-7 247 34 24.6 7.47 KM Plot
SARC rs7945699 chr11:44163817 T/C 0 256 30.85 35.77 0.73 KM Plot
SARC rs7950584 chr11:71219755 A/G 2.46E-5 256 8.37 26.25 33.18 KM Plot
SARC rs79626494 chr1:227296110 G/GTTT 4.15E-7 253 32.6 30.77 13.47 KM Plot
SARC rs7981835 chr13:71383053 A/G 2.79E-6 258 10.6 26.93 32.5 KM Plot
SARC rs79998318 chr4:87954166 A/G 1.17E-5 256 30.73 36.6 19.8 KM Plot
SARC rs80256390 chr3:53099594 C/T 0 254 32.3 27.1 2.13 KM Plot
SARC rs802748 chr6:128266583 C/A 0 254 0.57 32.88 31.97 KM Plot
SARC rs80294477 chr8:129424138 G/A 1.74E-13 258 33.9 23.17 3.97 KM Plot
SARC rs8034567 chr15:58013433 A/T 1.64E-12 253 28.47 46.3 3.1 KM Plot
SARC rs8042519 chr15:45996341 G/A 2.97E-5 255 31.97 36.02 14.08 KM Plot